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Here is the Ranking for MS degrees in USA in the discipline of Bioengineering or Biomedical engineering. The exhaustive list suggests all prominent degrees in the Master of Bioengineering and Biomedical Engineering.

#1 Johns Hopkins University (Whiting), Baltimore, MD
#2 Georgia Institute of Technology, Atlanta, GA
#3 University of California—San Diego (Jacobs), La Jolla, CA
#4 Duke University (Pratt), Durham, NC
#5 Massachusetts Institute of Technology, Cambridge, MA
#6 Stanford University, Stanford, CA
#7 University of California—Berkeley, Berkeley, CA
#8 University of Pennsylvania, Philadelphia, PA
#9 Boston University, Boston, MA
#10 Rice University (Brown), Houston, TX
#11 University of Washington, Seattle, WA
#12 Northwestern University (McCormick), Evanston, IL
#13 University of Michigan—Ann Arbor, Ann Arbor, MI
#14 University of Texas—Austin (Cockrell), Austin, TX
#15 Washington University in St. Louis, St. Louis, MO
#16 Case Western Reserve University, Cleveland, OH
#17 University of Pittsburgh (Swanson), Pittsburgh, PA
#18 Columbia University (Fu Foundation), New York, NY
#19 Cornell University Ithaca, NY
#20 University of Minnesota—Twin Cities, Minneapolis, MN
#21 Vanderbilt University, Nashville, TN
#22 University of California—Davis, Davis, CA
#23 California Institute of Technology, Pasadena, CA
#24 University of Virginia, Charlottesville, VA
#25 University of Wisconsin—Madison, Madison, WI
#26 University of California—Irvine (Samueli) 
#27 University of Utah, Salt Lake City, UT
#28 Yale University, New Haven, CT
#29 Carnegie Mellon University, Pittsburgh, PA
#30 Harvard University, Cambridge, MA
#31 University of Illinois—Urbana-Champaign, Urbana, IL
#32 University of Southern California (Viterbi), Los Angeles, CA
#33 Purdue University—West Lafayette, West Lafayette, IN
#34 University of California—Los Angeles (Samueli), Los Angeles, CA
#35 University of Maryland—College Park (Clark), College Park, MD
#36 Ohio State University, Columbus, OH
#37 Pennsylvania State University—University Park, University Park, PA
#38 Rensselaer Polytechnic Institute, Troy, NY
#39 Texas A&M University—College Station (Look), College Station, TX
#40 Virginia Tech, Blacksburg, VA
#41 Arizona State University (Fulton), Tempe, AZ
#42 Clemson University, Clemson, SC
#43 North Carolina State University, Raleigh, NC
#44 University of Florida, Gainesville, FL
#45 University of North Carolina—Chapel Hill, Chapel Hill, NC
#46 University of Rochester, Rochester, NY
#47 Brown University, Providence, RI
#48 Stony Brook University—SUNY, Stony Brook, NY
#49 Drexel University, Philadelphia, PA
#50 Rutgers, The State University of New Jersey—New Brunswick, Piscataway, NJ
#51 Tufts University, Medford, MA
#52 University of Illinois—Chicago, Chicago, IL
#53 Marquette University, Milwaukee, WI
#54 Tulane University, New Orleans, LA
#55 University of Connecticut, Storrs, CT
#56 University of Iowa, Iowa City, IA
#57 Northeastern University, Boston, MA
#58 University of Alabama—Birmingham, Birmingham, AL
#59 CUNY—City College (Grove), New York, NY
#60 Indiana University-Purdue University—Indianapolis, Indianapolis, IN
#61 University of Arizona, Tucson, AZ
#62 Virginia Commonwealth University, Richmond, VA
#63 Worcester Polytechnic Institute, Worcester, MA
#64 Colorado State University, Fort Collins, CO
#65 Dartmouth College (Thayer), Hanover, NH
#66 Michigan Technological University, Houghton, MI
#67 University at Buffalo—SUNY, Buffalo, NY
#68 University of California—Riverside (Bourns), Riverside, CA
#69 University of Miami, Coral Gables, FL
#70 University of Notre Dame, Notre Dame, IN
#71 Illinois Institute of Technology (Armour), Chicago, IL
#72 Oregon Health and Science University, Portland, OR
#73 University of Cincinnati, Cincinnati, OH
#74 University of Texas—San Antonio, San Antonio, TX

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